1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattactaatacttaacagtattttgtcaccaccttaaaagggcaaacaatctaatcgaaatattggtgaattgaatatattcattcttattttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTC
species | Glycine max |
transcript | GLYMA08G04840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAATGTTCTCATTTCTAAG GAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTEST: gi|192303569|gb|FG995947.1|FG995947
genomic: TAATGTTCTCATTTCTAAGgtaacattaa ... ttttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCT
EST: GTTGGGATAGCAAGCATGCCGGGATTAATGTTCTCATTTCTAAG GAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTEST: gi|298195045|gb|HO043573.1|HO043573
genomic: GTTGGGATAACAAGCATGCCGGGATTAATGTTCTCATTTCTAAGgtaacattaa ... ttttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCT
EST: AGTTTGGTTGGGATAACAAGCATGCCGGGATTAATGTTCTCATTTCTAAG GAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCT
genomic: AGTTTGGTTGGGATAACAAGCATGCCGGGATTAATGTTCTCATTTCTAAGgtaacattaa ... ttttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCT
aacaatctaatcgaaatattggtgaattgaatatattcattcttattttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTC
atctaat putative branch site (score: 3)
ttcattcttattttct putative PPT
tgaattgaatatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattactaatacttaacagtattttgtcaccaccttaaaagggcaaacaatctaatcgaaatattggtgaattgaatatattcattcttattttctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - -ccacctt
- - - - - - - - - - - - - - - - - - - - - gcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg