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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtctcctagatcttttttcatgggtttattagatgcttgcttctgcttcattatctgacaactgtcctaaattttgtggaacagATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGACAACTTATTGAGCCTTTTTACAGCAGTGTTGCTTGAGAGAAGAATTTTGCTTCGAGCTAATA

Basic information

species Glycine max
transcript GLYMA08G04510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04510.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------gtacagtctcctagatcttttttcatgggtttatta-gatgcttgct-----tctgcttcattatctgacaactgtcctaaattttgtgga--acagATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGACAACTTATTGAGCCTTTTTACAGCAGTGTTGCTTGAGAGAAGAATTTTGCTTCGAGCTAATA
                               ||    | |      ||  |     ||  |  |||| | |  | | |     |   |   ||| | |||  | ||   ||  ||  || ||   ||||||||||| ||||| |||||  | ||||||||||||||||||||| | |   |||||||||| || || ||||| || || || ||||| ||| |  | |
gtatgaccctttgacctgtttggacttagctgtgtgttttttactttcagtgactgtgattcaattacggttatagttgaaaattgaccaaattttttgatgattgatgtattttccgttgactgcagATATCATTCCAGCCACTGGTAGAATGCTTGGATGTTGACAACTTAATTACATTTTTTACAGCTGTATTACTTGAAAGGAGGATATTGCTGCGATCAGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729795|gb|BW658600.1|BW658600
EST:     TCTGCTTTCTGTAGAGGCTCCACCTATTGGAT-GGCTTCCCCATGCTGAT                         ATATCATTTCAGC
genomic: TCTGCTTTCTGTAGAGGCTCCACCTATTG-ATTGGCTTCCCCATGCTGATgtacagtctc ... tgtggaacagATATCATTTCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgcttgcttctgcttcattatctgacaactgtcctaaattttgtggaacagATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGACAACTTATTGAGCCTTTTTACAGCAGTGTTGCTTGAGAGAAGAATTTTGCTTCGAGCTAATA
                                   tcctaaa  putative branch site (score: 2)
                                      taaattttgt  TA-rich tract