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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcacctggcaatagttgtctcgtttagtcatgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 6
-----gtatgctcacctggcaatagttgtctcgtttagtcatgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG
      |   |  |  |||  |||  | | |  |  |    | ||||    |  | | ||  |||| |||  ||| ||| |  |      ||  |||||||| ||||||| |||||||||||||||||||| ||||| |||||||| || |||||||| ||||| || || |||||||| |||||||| ||||
gtataatggccatatatggacataaatttgttttgcaact-tcaattagaataat-gttctaatttctgatatttatttgtactaatttgtttcagAGAACTCTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTTCCAGATGTTGGATTTGCTTACATAGCAGCACAGAGTCCAGGAGAAGGATCAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207821410|gb|GD790587.1|GD790587
EST:     TTTGGAATTGGTTTATCTTGGTTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: TTTGGAATTGGTTTATCT-GGT-CATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
EST: gi|209704856|gb|BW673467.1|BW673467
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAAT
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAAT
EST: gi|298170101|gb|HO018725.1|HO018725
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
EST: gi|209726516|gb|BW658083.1|BW658083
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG
                             cttttctttttcattc  CT-rich tract
                    tatttatgactttt  TA-rich tract