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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG

Basic information

species Glycine max
transcript GLYMA08G03760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G061419_T01 (Zea mays), 3'ss of exon 4
gtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgca---tgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
                                                                                        |  ||| | || |  |  |  | ||||  || |     ||||   |  |  ||||     | | | |    | |||| |  |   | |||||  || | || || ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||||||
----------------------------------------------------------------------------------------gtaagtggattgcc-tcgtaaggttta--cagtcacaatattgttaatttcttcatct--actgtaacat-tatttgatataaatttcagGACAATCTGGAGGCAAAGGTGGTCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG

upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
                                 ||   |||  |||           || ||    |    | |||||   |  |   | | |  || |  |   |  ||| || |    |  ||   | |  ||    |  ||| |     | ||   | ||   || |  ||||||||||||||||||||||| || || |||||||| |||||||| ||||| || |||||||| ||||| |||
---------------------------------gtacagcagacatgtttcaacatatcattgtgttcgtgttatttgttat-ctatcgatggaagtatagtccatatggccttcttttgtcttgaagtatctactgactctacatttttcctaatctgtcttcaatgtacacagGATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTG

upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 4
gtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
| ||  ||   ||        |||| || |   | ||| ||   | ||    ||     |  ||   ||     |||    || |||||  | || |||  | ||||        | ||| | |||  |     | ||||| ||      |||   |  ||| |  ||    |||||| |||||||   |||| ||||||| |||| ||||||||||||||| ||||||||| |||| ||||| |||
gcatgcatttatttttctaccatttcatttt--gctttacagaaagaa----ctagactccctcttatacacatttttatgtgatggaggcatttatttgatatttt--------ttcatca-tgtcttc----cttcattgact-----tttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
                          taaatttgat  TA-rich tract