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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatagtatagtagaaaaacaggctgtaatttttttaaaatgtttacttgtgtgccactataaaacaagtgaatttaataaaggtatataaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATACG

Basic information

species Glycine max
transcript GLYMA08G03070.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03070.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 4
-aaaatagtatagtagaaaaacaggctgtaatttttttaaaatgtttacttgtgtgccactataaaacaagtgaatttaataaaggtatata-aacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATACG
 ||  |  | | | | | | | | |     |||    | ||||| ||  |||  ||    | | |   |   |  | ||| |   | |  || ||||||||| |||| |  || || ||||| |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
taagtttattttgaaaagacaaaaga-accattcaagtgaaatgattgattgattgattttgtgacttaca-gtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208170854|gb|GD969249.1|GD969249
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAGGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
EST: gi|192326778|gb|FK018905.1|FK018905
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
EST: gi|298188842|gb|HO035535.1|HO035535
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgtgtgccactataaaacaagtgaatttaataaaggtatataaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATACG
                            atttaat  putative branch site (score: 4)
              tataaaacaagtgaat  TA-rich tract