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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatagagagtactaccaaggcacaagtatccaaactgaactgatcaatacataattacacataattagaatgttgctttgaaaaagtttagattctatattcaattgtttatgtaaaattgatgatttcttattggtttaatttctaaactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAA

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaaatagagagtactaccaaggcacaagtatccaaactgaactgatcaatacataattacacataattagaatgttgctttgaaaaagtttagattctatattcaattgtttatgtaaaattgatgatttcttattggtttaatttctaaactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAA
                                                                       || |||| |        | |  | | ||| | |   |||   | | | | || |   ||| |       |||| ||||| |         ||||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| ||||| || || ||||| || ||||||||||| ||  | || |
----------------------------------------------------------------------gtaaaatgctctacaatgacaaatcaaattatttccacaaccatct-tctgaattc--tgactcagagacggttaaatttatgt------tagGTGAACTATGTGAATGCTCATGCAACATCAACTCTGGCAGGGGATTTGGCAGAGGTCAATGCCATCAAGAAGGTCTTCAAGGACACATCTGAGATAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448546|gb|BQ252670.1|BQ252670
EST:     CATCTTGCATAAGCAACAGTTTACAAAATGCTGGAGTTTCTCCTGAAGAG                         GTGAACTATGTGAATGCTCATGCCCCGTC
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTC
EST: gi|6718887|gb|AW306534.1|AW306534
EST:     CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAG                         GTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
EST: gi|58018638|gb|CX705380.1|CX705380
EST:     CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAG                         GTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtttatgtaaaattgatgatttcttattggtttaatttctaaactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAA
                                        ttctaaa  putative branch site (score: 2)
     tttatgtaaaattgat  TA-rich tract