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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgattttaatttcataattataataatttgttgaacagtactgaacaatgatatctgatgagagtttttctcttttcagCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTG

Basic information

species Glycine max
transcript GLYMA08G02690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02690.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------gttttgattttaattt-cataattataataatt-tgttgaacagtactgaacaatgatatctga-tgagagtttttctcttttc------agCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTG
                  || ||||    |     | |  | ||| |  |  ||    | | || | |  ||    |||||| ||||| | |||   | | |      ||||||| |||||||| ||||| || ||| | || ||| | || || || ||||   | ||| |  | |||||||||||||| |||||||||||||| ||||
gtagcacctttagcctgagtattgacccaagcccaccttgtgatagtggtgatgaatgataataatcaggaaatgaatctgactgagattatttgcttgtgctgtgtaagCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGATCATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgttgaacagtactgaacaatgatatctgatgagagtttttctcttttcagCTTTTCATCGAAGAAATTTGTCGCGATATCCACCGTGCAGATTCAGATTGGACAGTTATACTATTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTG
                            atctgat  putative branch site (score: 4)
                                        tttttctcttttc  putative PPT
                      aatgatat  TA-rich tract