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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtttcaaatcttgagattaataaaatcatattagcttttaactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG

Basic information

species Glycine max
transcript GLYMA08G02390.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 4
cagtttcaaatcttgagatt-aataaaatcatattagcttt-taactgctttgatatcaaatttcagttgtagcacacctgatt-ttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
   ||| |||||   || ||   |  |||   | ||  |||      | | | |   |  || |   |  |        || |  | |  |||   ||| ||||||||| || || ||| |||||||||| |||||||||||||||||||| || |||||||||||  | || || || || ||||| || ||  | || |||
---tttgaaatccatagcttcgtttcaatttcaatacttttactgtagttcttaatcctgatatggatcctgctgtttatgctaatataatgtgtttatgcagCTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g12260.1 (Oryza sativa), 3'ss of exon 4
-cagtttcaaatcttgagattaataaaatcatattagcttttaactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
  || |  |    ||    |||    |||||    |  |  |   |  || |||   || | |        | |  |||||| ||| |  ||  |||| ||||||||||| || ||| | ||||| || ||||||||||| || |||||||||||| | |||||  | || || || |||||| | || ||||| ||||||
gaagctatagccatttttcttatactaatcaaccaaaatcatgttta-ttagatgataactatatagatctgaatgcctgatatttgtaatttttatttagCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
cagtttcaaatct----tgagattaataaaatcatattagctttt-aactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
   ||   ||| |    ||     ||||   |     |||||||| ||||   |      || | |||   |||   |   || |   | | ||||  ||||||||||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||||||||| ||  | || || || |||||||| || ||  | ||||||
--attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatat-tctaaaagtatctgtt--tattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 4
--cagtttcaaatcttgagattaataaaatcatattagctttt-aactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
        || |   |      ||||  ||     |||||||| ||||   |      || | |||   |||   |   || |   | | ||||  | ||||||||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||||||||| ||| | || || || |||||||| || ||  | ||||||
tttgaacacagagtctatttccaatagcatgtggctagcttttcaactcaatcttggccatagttccaatgttctat-tctaaaagtatctgtt--tgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G078839_T01 (Zea mays), 3'ss of exon 4
--cagtttcaaatcttga-gattaataaaatcatattagc-ttttaactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
    |  ||   || ||  | |||  | ||  || | | | | || | |||    || | ||  ||  |    || |  |    | || |   |    ||  ||||| ||||| || ||| | ||||| || |||||||||||||| |||||||| ||||| |||||  |  |  | ||||||||| | || ||||| ||||||
tgtgggatctgttcctgtcggttatcagaagaatctaatcatgtttaatgc----atgttaaggttgtgcatcagaatgctcactgttgtacctcccaatgtagCTCCGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATTGTCTGTGAAAACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 3'ss of exon 4
cagtttcaaatcttgagattaataaaatcatattagcttttaactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatatt---cagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
            |  |  || || ||| || | || ||   | ||   |    ||||||    |  | ||  || |   ||     |||| |||||    |||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||||||||  |  | || || |  ||||| || || |||||||||
-----------gtaaaatttcatcaaaccaaaata-ctaaaagctatataagaatcaaa----aactctaatac-caatatggcacttgtggatatataacagTGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 3'ss of exon 4
cagtttcaaatcttgagattaataaaatcatattagcttttaactgctttgatatcaaatt-tcagt---tgtagcacacctgattttttttgttgatatt----cagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
     | |||| |   | ||   |  || |  |||  ||| || |  | | | |  | ||| |||||   |  | |     ||||  | | | ||||   |     |||||||| || || ||||| |||||||||||||| || || ||||| || || ||||||||||| ||||||||||| |  |||||||  || || |||| |
----gtaaaatttcatgtttctcatcattactttacatttaaatttttataaaagaacattatcagtgtttagatccggtttgatagtgtattttgaacatgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG

upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 4
cagtttcaaatcttgagattaataaaatcatattagcttttaactgctttgatatcaaatttcagttgtagcaca----cctgattttttttgttga-tattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
  ||        ||| |   |||||| | | ||| |  |  ||| |||||  | | |||    |||  | | | |     ||||| ||   | || | | | ||||||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| |  | ||||| || ||||||||||| |||||||||
-tgtggggctgtttgtgggaaataaa-taacatttg--taaaacagcttttgt-tgaaagaatagtgatggaaaagccctctgatattagcttttcactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493334|gb|EH221501.1|EH221501
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|18848551|gb|BM567727.1|BM567727
EST:     TCTATCTTCCCAC-TGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGGTGGGGTGGTTGTTGGGCTTCTCGTGATGG
genomic: TCTATCTTCC-ACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGG-TGGGGTGGT-GTTGG-CTTCTCGTGATGG
EST: gi|23729135|gb|BU762653.1|BU762653
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|6341379|gb|AW164203.1|AW164203
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGG
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGG
EST: gi|213595223|gb|DB962362.1|DB962362
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTC
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTC
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|26048381|gb|CA784877.1|CA784877
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|19935254|gb|BQ080284.1|BQ080284
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
EST: gi|207811307|gb|GD784740.1|GD784740
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192327864|gb|FK022437.1|FK022437
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTNNNNNNNNTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|192317054|gb|FK007835.1|FK007835
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|193636190|gb|FK583051.1|FK583051
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGNTTGTGTGT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
EST: gi|13563524|gb|BG551744.1|BG551744
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         -TCTGG-GGGTTGGNGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192316066|gb|FK008891.1|FK008891
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA-
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|13563500|gb|BG551720.1|BG551720
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGGTGTTGGCTTTCTCGTGATGGAAAGATT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGG-TGTTGGCTT-CTCGTGATGGAAAGATT
EST: gi|151396120|gb|EV265997.1|EV265997
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|8827772|gb|BE211502.1|BE211502
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGANNGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|23728894|gb|BU762516.1|BU762516
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGCGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|27425810|gb|CA937330.1|CA937330
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|7234524|gb|AW569861.1|AW569861
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208182206|gb|GD980653.1|GD980653
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
                                          tgttgat  putative branch site (score: 4)
                                   ttttttttgtt  CT-rich tract
                                  attttttttgttgata  TA-rich tract