1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgaagtgtttctttatcatttgacatttactgccatggaggttctaatattaacttgaattttatatactgcgatgtaatgtatttctatgttttcgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCATGTAGACTCTTTTGGTGGGAAGGCAATTGCCGAGATTAAGAAGCAATA
species | Glycine max |
transcript | GLYMA08G02250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|31468897|gb|CD410925.1|CD410925
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|209706501|gb|BW670846.1|BW670846
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACAC--TGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|208217660|gb|GE014810.1|GE014810
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|208222906|gb|GE021267.1|GE021267
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTG-CCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|193705113|gb|FK641915.1|FK641915
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|208102321|gb|GD897790.1|GD897790
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTAEST: gi|192314288|gb|FK007026.1|FK007026
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTA
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|58022959|gb|CX709700.1|CX709700
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|5126540|gb|AI748276.1|AI748276
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|193453184|gb|FK419436.1|FK419436
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATTEST: gi|193409073|gb|FK372433.1|FK372433
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGCTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAACATGAAGATCEST: gi|209700966|gb|BW652130.1|BW652130
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGEST: gi|209720015|gb|BW651097.1|BW651097
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTG
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|16348956|gb|BI974551.1|BI974551
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|58016517|gb|CX703259.1|CX703259
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|209707944|gb|BW657039.1|BW657039
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|209718853|gb|BW669040.1|BW669040
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|7146238|gb|AW508092.1|AW508092
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|209707943|gb|BW657038.1|BW657038
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTCTCTATTTTGGGTAGCTGGGCCAACTTCTTNGACC-TGNTCTACATAG CTTTTGTTTTGCTGCEST: gi|26048891|gb|CA785344.1|CA785344
genomic: TTCTCTATTTTGGGTAGCTGGGCCAACTTCTT-GACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|151410441|gb|EV280256.1|EV280256
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|16106248|gb|BI893988.1|BI893988
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|7234038|gb|AW569379.1|AW569379
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|208245405|gb|GE047399.1|GE047399
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCCGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAGGATCEST: gi|193597812|gb|FK552802.1|FK552802
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|163926246|gb|EH038426.1|EH038426
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|254315482|gb|GR825291.1|GR825291
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|207719372|gb|GD703411.1|GD703411
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|207720152|gb|GD701181.1|GD701181
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTCTTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|192316395|gb|FK006742.1|FK006742
genomic: TTC-TCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|192314289|gb|FK007027.1|FK007027
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|10255432|gb|BE823198.1|BE823198
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|151410830|gb|EV280645.1|EV280645
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACCGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|151405404|gb|EV275218.1|EV275218
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|209698633|gb|BW656484.1|BW656484
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCEST: gi|192316396|gb|FK006743.1|FK006743
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
EST: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAG CTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
genomic: TTTCTCTATTTTGGGTAGCTGGGCCAACTTCTTGACCCTGTTCTACATAGgtaatgaagt ... cgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATC
taacttgaattttatatactgcgatgtaatgtatttctatgttttcgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCATGTAGACTCTTTTGGTGGGAAGGCAATTGCCGAGATTAAGAAGCAATA
tattaac putative branch site (score: 1)
tgttttc putative PPT
tgaattttatatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaagtgtttctttatcatttgacatttactgccatggaggttctaatattaacttgaattttatatactgcgatgtaatgtatttctatgttttcgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCATGTAGACTCTTTTGGTGGGAAGGCAATTGCCGAGATTAAGAAGCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA