1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcagcaatatttaaagaattttattacatgcatacttgccatatccatttgattcaaccttgctttgttactgccactacttaaaatttgttaattcagttttctgatttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGA
species | Glycine max |
transcript | GLYMA08G01940.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTG ACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAEST: gi|298198506|gb|HO040045.1|HO040045
genomic: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGgtaagcagca ... ttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCA
EST: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTG ACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAEST: gi|298182580|gb|HO031315.1|HO031315
genomic: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGgtaagcagca ... ttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCA
EST: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTG ACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAEST: gi|192324802|gb|FK016873.1|FK016873
genomic: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGgtaagcagca ... ttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCA
EST: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTG ACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCA
genomic: TGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTGgtaagcagca ... ttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCA
tttgttactgccactacttaaaatttgttaattcagttttctgatttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGA
ttctgat putative branch site (score: 3)
ttttctgatttccttt CT-rich tract
ttaaaatttgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagcaatatttaaagaattttattacatgcatacttgccatatccatttgattcaaccttgctttgttactgccactacttaaaatttgttaattcagttttctgatttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC