1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgccaaatgttttcctcttcaatgcccttttgtaacttgacaaggctggtttttggcaattaagaccacacctgtcacctgtaacaaaataaacaaaagaaaaagaaaaacacagaattgtcatgtgttgctcattaaaaagaatggcatgtttatttcgtttttgtcttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTATTCTAAGTACAATTCGAGCCAGTATGAAGAAAAGGGCCTTTCCGTGGTG
species | Glycine max |
transcript | GLYMA08G01850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCG GTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTAEST: gi|209716618|gb|BW676988.1|BW676988
genomic: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGgtaatgccaa ... cttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
EST: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCG GTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTAEST: gi|57575436|gb|CX548411.1|CX548411
genomic: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGgtaatgccaa ... cttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
EST: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCG GTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTAEST: gi|254321654|gb|GR824971.1|GR824971
genomic: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGgtaatgccaa ... cttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
EST: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCG GTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTAEST: gi|23728772|gb|BU762447.1|BU762447
genomic: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGgtaatgccaa ... cttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
EST: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCG GTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
genomic: GTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGgtaatgccaa ... cttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTA
atgtgttgctcattaaaaagaatggcatgtttatttcgtttttgtcttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTATTCTAAGTACAATTCGAGCCAGTATGAAGAAAAGGGCCTTTCCGTGGTG
tttcgtttttgtctt CT-rich tract
tcattaaaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgccaaatgttttcctcttcaatgcccttttgtaacttgacaaggctggtttttggcaattaagaccacacctgtcacctgtaacaaaataaacaaaagaaaaagaaaaacacagaattgtcatgtgttgctcattaaaaagaatggcatgtttatttcgtttttgtcttatcgcagGTTACCAGAGAGTCATTGATACAAAAGGCTGTTGTGATAAATATTGGATTATTCTAAGTACAATTCGAGCCAGTATGAAGAAAAGGGCCTTTCCGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA