1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctagtacaaatttcaatgttcttcaagtgcatttatccctaattatgggatcattcattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
species | Glycine max |
transcript | GLYMA08G00740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGEST: gi|192331064|gb|FK020284.1|FK020284
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
EST: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGEST: gi|254330134|gb|GR839687.1|GR839687
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
EST: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGEST: gi|192294016|gb|FG987185.1|FG987185
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
EST: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG GAAA-CCAGCATACATGTATAGT
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGT
atgggatcattcattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
atcattcattattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagtacaaatttcaatgttcttcaagtgcatttatccctaattatgggatcattcattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
- - - - - - - caatgtt
- - - - - - - - - - -cttcaag
- - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaag