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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtctaactttatcaatatttaagtgtttgaaatggccatatttcttcgtcattttgtaatgatgctaattttctgtttcaattgccaccatttttatcagCTAGTGCTTTGATAGAAACATTGAAGGAGCGCATGTTCAAGCCTTCCCTGTCAACTCTAATGGGTGAAAATACAAA

Basic information

species Glycine max
transcript GLYMA08G00560.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295459|gb|FG987073.1|FG987073
EST:     TGCTGCTGCAGTTGAAGGGGTGGAGCGCCACCGGGGTAGCAATGTATCTG                         CTAGTACTTTGATAGAAACATTGAAGGAGCGCATGTTC
genomic: TGCTGCTGCAGTTGAAGGGGTGGAGCGCCACCGGGGTAGCAATGTATCTGgttggttaac ... tttttatcagCTAGTGCTTTGATAGAAACATTGAAGGAGCGCATGTTC
EST: gi|254333299|gb|GR850549.1|GR850549
EST:     TGCTGCTGCAGTTGAAGGGGTGGAGCGCCACCGGGGTAGCAATGTATCTG                         CTAGTGCTTTGATAGAAACATTGAAGGAGCGCATGTTCAAGCCTTCCCTGT
genomic: TGCTGCTGCAGTTGAAGGGGTGGAGCGCCACCGGGGTAGCAATGTATCTGgttggttaac ... tttttatcagCTAGTGCTTTGATAGAAACATTGAAGGAGCGCATGTTCAAGCCTTCCCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcattttgtaatgatgctaattttctgtttcaattgccaccatttttatcagCTAGTGCTTTGATAGAAACATTGAAGGAGCGCATGTTCAAGCCTTCCCTGTCAACTCTAATGGGTGAAAATACAAA
                 tgctaat  putative branch site (score: 2)
                                          ccattttt  putative PPT
     attttgtaat  TA-rich tract