Sequence
atgc intronic sequence ATGC exonic sequence...ttatccttgaagatattacaatggtgtactttagctggaaaaatttaggttgtgtttctttctacttgctatcttaaacgttatgtttttgtatcggaagGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAA
Basic information
species | Glycine max |
transcript | GLYMA07G40290.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 7
ttatccttgaagatat-tacaatggtgtactttagctggaaaaatttaggttgtgtttctttctacttgctatcttaaacgttatgtttt-tgtatcggaagGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAA
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ttagaactgatggcacatgctataaaggacatta--tggggcttttatattaatatgtgtcttaaaaatttgattcatcgtttgtgcctaatgtttttgcagGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192318530|gb|FK008274.1|FK008274EST: TCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAG GCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAAC
genomic: TCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGgtactttaca ... gtatcggaagGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taggttgtgtttctttctacttgctatcttaaacgttatgtttttgtatcggaagGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAA
tttttgt CT-rich tract
ttatgtttttgtat TA-rich tract