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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacaatccctgcttagatttaataagatttttatttatgttattcatcttaaaacacagaatatcagttttttggttgtgaccttgggctttgatacatattatcaattgttataatgtcgtgtgttataataatgaaaattcaaccatcgtctgatgattattgaaatgcacttggatttcatgctcagTGAATCAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCAC

Basic information

species Glycine max
transcript GLYMA07G40180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40180.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01960.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtacaatccctgcttagatttaataagatttttatttatgttattcatcttaaaacacagaatatcagttttttggttgtgaccttgggctttgatacatattatcaattgttataatgtcgtgtgttataataatgaaaattcaaccatcgtctgatgattattgaaatgcacttggatttcatgctcagTGAATCAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCAC
                                                                                || |||   |   | |  |||||| |||  || | || | || |      || ||||  || |   | ||  || |    |||  |  |         |||| ||   |   ||||||   |  ||||  |||| || |||||| |||| |||||||||||||||||||| ||||||||  |||||   || |||||||| || |||||||| ||
-----------------------------------------------------------------------------atcttctgatgctaatcctaaatacat-ttacaaaatattgtcatttttctccttttaatt-tgta---ttaattattgct--atgggtggt---------ttgggtt--gttgacagTGACAGAGGCAGAAATGGATAGATTAAAGCATGCCTTGAAGCTTCTCTCAGAGGCTGAGAAACAACTAAGGGTTTCAAGTGAACGTTCAACATGGTTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaattcaaccatcgtctgatgattattgaaatgcacttggatttcatgctcagTGAATCAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCAC
               gtctgat  putative branch site (score: 4)
                    atgattattgaaat  TA-rich tract