1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtaagtgtgatccatcagcatgatttttctatatgctcattagcaattacattttgtattgataatatttttttatttgaaaaaatctgtattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGACGGGCAGTGGAAGAAGGACGTGGGCTGGTTGTGATTGTGAACAAGATGG
species | Glycine max |
transcript | GLYMA07G40160.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGAEST: gi|193444238|gb|FK406624.1|FK406624
genomic: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
EST: GCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGAEST: gi|21675269|gb|BQ627620.1|BQ627620
genomic: GCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
EST: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
genomic: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
aattacattttgtattgataatatttttttatttgaaaaaatctgtattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGACGGGCAGTGGAAGAAGGACGTGGGCTGGTTGTGATTGTGAACAAGATGG
tattgat putative branch site (score: 3)
attttgtattgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaagtgtgatccatcagcatgatttttctatatgctcattagcaattacattttgtattgataatatttttttatttgaaaaaatctgtattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGACGGGCAGTGGAAGAAGGACGTGGGCTGGTTGTGATTGTGAACAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -aagtgtg
- - - - - -tccatca
- - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat