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...aaaagagactattttcccttttatctatatggcatactttgtaatattcagtatgcactcttttcaatgcatttgattattccatttcttttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA
species | Glycine max |
transcript | GLYMA07G39450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA TTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAAEST: gi|298197514|gb|HO044993.1|HO044993
genomic: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAAgtaggttcac ... ttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
EST: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA TTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAAEST: gi|298174570|gb|HO017793.1|HO017793
genomic: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAAgtaggttcac ... ttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
EST: CCTGGCACAGGTGGGACACGGTATCAACTCAGATATCCTTAAAACTGAAA TTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAAEST: gi|151413214|gb|EV283022.1|EV283022
genomic: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAAgtaggttcac ... ttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
EST: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA TTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAAEST: gi|7146390|gb|AW508312.1|AW508312
genomic: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAAgtaggttcac ... ttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
EST: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA TTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
genomic: CCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAAgtaggttcac ... ttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAA
attcagtatgcactcttttcaatgcatttgattattccatttcttttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA
atttgat putative branch site (score: 5)
ttattccatttctttt CT-rich tract
atttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagagactattttcccttttatctatatggcatactttgtaatattcagtatgcactcttttcaatgcatttgattattccatttcttttggtttcagTTGACAAGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
aaaagaga
- - - - - - -ttccctt
- - - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt