1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttggcctatttctctgctgctttgctatatagattattcatttcaactcttacacatcttcgtcaacgagtatggggaataatttattttacatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTGTTATTGGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGC
species | Glycine max |
transcript | GLYMA07G39380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAG TTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTEST: gi|7591049|gb|AW706790.1|AW706790
genomic: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat ... acatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTT
EST: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAG TTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTEST: gi|254323780|gb|GR836119.1|GR836119
genomic: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat ... acatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTT
EST: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAG TTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTEST: gi|208184291|gb|GD986195.1|GD986195
genomic: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat ... acatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTT
EST: GTTTTGACATGATTCGCAGTGGGAGGGACGAGATTGAAACTCCAGAGCAG TTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTT
genomic: GTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat ... acatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTT
actcttacacatcttcgtcaacgagtatggggaataatttattttacatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTGTTATTGGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGC
ctcttac putative branch site (score: 3)
aataatttattttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcctatttctctgctgctttgctatatagattattcatttcaactcttacacatcttcgtcaacgagtatggggaataatttattttacatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAAACTTGGACGGCCTTGTTGTTATTGGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG