1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagattaatttatatagattgtcatagcaagtgatgaatatatagtatagctctaacttattaattattatttccagATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACCATGGCAGTTGGTTGCC
species | Glycine max |
transcript | GLYMA07G39250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATG ATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAEST: gi|22523073|gb|BU081884.1|BU081884
genomic: CTATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATGgtagattaat ... ttatttccagATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGA
EST: CTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATG ATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGA
genomic: CTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATGgtagattaat ... ttatttccagATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGA
catagcaagtgatgaatatatagtatagctctaacttattaattattatttccagATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACCATGGCAGTTGGTTGCC
tattaat putative branch site (score: 2)
ttatttcc putative PPT
aatatatagtatagct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattaatttatatagattgtcatagcaagtgatgaatatatagtatagctctaacttattaattattatttccagATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACCATGGCAGTTGGTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG