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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctatgggtctagatatcgcaattttttagttcttctgctatttggtggttgtgattgtccttaatattttacagGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTAGCATTGCATCTGATGAAAGCAGACATCATGCAACCAATTGGAACAGTTC

Basic information

species Glycine max
transcript GLYMA07G38890.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 5
----------gtatgttctatgggtctagata---tcgcaattttttagttcttctgctatttggtggttgtgattgtccttaatattttacagGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTAGCATTGCATCTGATGAAAGCAGACATCATGCAACCAATTGGAACAGTTC
            || ||  |    | |  |||   || |  ||  ||| |  | |  |          || | ||||| || | | |||  ||||| |||||||| |||||||||||||| || ||||||   |||| | | || ||| ||||  |||||||| | |||||||||||||| |||  || ||| |
gtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttctgact-tttggcagGTCGAACAAGCTTGCTCTGCTCTTTCTTCTCTTGCCATGGATGTTCCTGTGGCAATGCAGTTGATGAAATCTGACATCATGCAACCCATTCAAAGAGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttttagttcttctgctatttggtggttgtgattgtccttaatattttacagGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTAGCATTGCATCTGATGAAAGCAGACATCATGCAACCAATTGGAACAGTTC
                                       ccttaat  putative branch site (score: 4)
                                         ttaatattttaca  TA-rich tract