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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtgggagattgttgctcagatttaagcacttacttgcttgtttgttcctctcacctactgggtgttattcatttttactgtcagGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATA

Basic information

species Glycine max
transcript GLYMA07G38020.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 5
gtataagtgggagattgttgctcagatttaagcacttacttgcttgttt-gttcctctcacc----tactgggtgtt------attcatttttactgt-cagGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATA
  ||   |   || || |||||    | |||  | | | |   || |||  || ||   |      | ||| |  ||      ||   ||||   ||| |||||||| | ||||||||||||| | |||| |    | ||||||||| ||||||||||||| | |||||| |||||||| || || ||||||||||| ||||
--atttataatagtttcttgcttgcttataaaaaataaataaattctttcatttcttgtaatgtaatgctgaggattctgtatatcttttttctttgttcagGTGCTTAATTTTGATAGATTTACCTGGAGCGCTCCTTCGTCAAAGATTTACTTGTCACCTACCAGTCTACCACTGAAGATCCCTGCATGCAAGGGTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttgcttgtttgttcctctcacctactgggtgttattcatttttactgtcagGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATA
                                      ttcattttt  CT-rich tract
                                 tgttattcattttta  TA-rich tract