1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttagtctatgatgttatgtgtttttatctatatttgttctgcaatttagtcatattgatctgttattgatgcttttaattgtgaattctacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
species | Glycine max |
transcript | GLYMA07G37640.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|207685555|gb|GD667669.1|GD667669
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|208298330|gb|GE089723.1|GE089723
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193357955|gb|FK318967.1|FK318967
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTT-CTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|208252534|gb|GE043886.1|GE043886
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193541839|gb|FK496609.1|FK496609
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: AAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193622272|gb|FK567716.1|FK567716
genomic: AAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193719467|gb|FK651855.1|FK651855
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTC-ACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193651025|gb|FK597590.1|FK597590
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193619692|gb|FK570860.1|FK570860
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|208178234|gb|GD975779.1|GD975779
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
genomic: CACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGGgtaacatgct ... tacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
atttagtcatattgatctgttattgatgcttttaattgtgaattctacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
ttttaat putative branch site (score: 3)
ttctactt putative PPT
ttttaattgtgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagtctatgatgttatgtgtttttatctatatttgttctgcaatttagtcatattgatctgttattgatgcttttaattgtgaattctacttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA