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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaattatatgaaatgagaaatttatttgtatgtgtggatcaaactaattgtttttcatttcctttgctctttctctgtgatagGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCGTCCAATAAG

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298175477|gb|HO015110.1|HO015110
EST:     TTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGAT                         GTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGCGCGACCGCACAGA
genomic: TTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGATgtaagtaaat ... tctgtgatagGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGA
EST: gi|151395938|gb|EV265815.1|EV265815
EST:     TTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGAT                         GTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGA
genomic: TTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGATgtaagtaaat ... tctgtgatagGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgtggatcaaactaattgtttttcatttcctttgctctttctctgtgatagGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCGTCCAATAAG
             aactaat  putative branch site (score: 2)
                   ttgtttttcatttcct  CT-rich tract
                taattgtttttcattt  TA-rich tract