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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG

Basic information

species Glycine max
transcript GLYMA07G33780.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G127948_T04 (Zea mays), 3'ss of exon 6
--------tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG---------------------------------------------
        |      |   | | |  | | ||  |      | |   | | | | || |  | | |     |    |    |||  ||| ||         ||||||||||||||| ||    |  |||||| |||| || || || ||||||||||||||||||||||||||| || || || |  |||| || ||  | || |||                                              
gtacgaaatggccaggccgccagatctgtgcttcttcgcctatatcgatcgagtagaagt-tgacatgacatctcggacccgtgtctgtctgcatctg--cgcaggagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaagGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAAGCTGGGCGGCCTCATCGGCTACGACAACACGCTGTGGAACGGCTCCGTCGTGCTCC

upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G127948_T02 (Zea mays), 3'ss of exon 5
--------tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
        |      |   | | |  | | ||  |      | |   | | | | || |  | | |     |    |    |||  ||| ||         ||||||||||||||| ||    |  |||||| |||| || || || ||||||||||||||||||||||||||| || || || |  |||| || || | |||| |  
gtacgaaatggccaggccgccagatctgtgcttcttcgcctatatcgatcgagtagaagt-tgacatgacatctcggacccgtgtctgtctgcatctg--cgcagGAGAAGAACCACGGGTCGTTCGACTTCGTCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAA-GCTGGGCG--

upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34050.2 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------------------------------tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
                                                                                       |  ||       | | ||| |     ||   |||       |  ||     || || |||| ||  |    |  | ||||||||||||    |||||||||||||||||||||  |||||||| || || |||||||| ||||| ||||||||| |||||||||||||| | ||||| || ||||| ||| |||| |   
gtaagcattcttctttctgacgtaattaacaaaaaagatgatgaagataatgaaataattaaaaactcatggcctaattaggttgatttaatatcttgatgagaatttctgtatacgcaaatttgtttcctttttcatag-aagaaagtgtggt-aactgattattgtgtgtggttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAATTGGAG---

upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S16_28V6.1 (Physcomitrella patens), 3'ss of exon 4
tctatgagagactaaaaa--tatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagt--gattgtgtgtggtgaaatg-caggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
   | |  ||  ||| ||  | |||  |   |  ||| ||||||| ||   |   |    | | |        |  |  |||||        ||| || ||||| ||||| || |     |  ||||||||||| || || |||||||| |||||||| || ||||||||||||| | | ||  || | || |  || || |   
--caaggaagtgtaagaagctgtacagggtgtggaaagaaaaacagttattgacctgtctatgtgaggccaactcatcagattgcaaacttggaattggcagGACAAGAATCACGATTCTTTCGACTTCATCTTCGTAGACGCGGACAAAGACAACTATCTGAACTACCACAAGAAGCTCATGAAGTTGGTGAGGGTGGGAG---

upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: EFJ22516 (Selaginella moellendorffii), 3'ss of exon 4
tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
                        ||  || || | ||      ||       ||    |   | |          ||  ||     |     |||||||  ||| |||||    |  |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |   
---------------------gtaagctttcaatacaacttttctt-------tatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCATTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG---

upper sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
lower sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
                        ||  || || | ||      ||       ||    |   | |          ||  ||     |     |||||||  ||| |||||    |  |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |   
---------------------gtaagctttcaatacaacttttctt-------tatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145686|gb|CK605897.1|CK605897
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|41145686|gb|CK605897.1|CK605897
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|21677191|gb|BQ629542.1|BQ629542
EST:     TACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: TACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|21677191|gb|BQ629542.1|BQ629542
EST:     TACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: TACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|21677191|gb|BQ629542.1|BQ629542
EST:     TACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: TACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|21677191|gb|BQ629542.1|BQ629542
EST:     TACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: TACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|20498741|gb|BQ273671.1|BQ273671
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|20498741|gb|BQ273671.1|BQ273671
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|20498741|gb|BQ273671.1|BQ273671
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|20498741|gb|BQ273671.1|BQ273671
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|151395162|gb|EV265033.1|EV265033
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|151395162|gb|EV265033.1|EV265033
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|16106075|gb|BI893815.1|BI893815
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|16106075|gb|BI893815.1|BI893815
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|16106075|gb|BI893815.1|BI893815
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|16106075|gb|BI893815.1|BI893815
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|4301016|gb|AI443130.1|AI443130
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|4301016|gb|AI443130.1|AI443130
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|15661667|gb|BI699038.1|BI699038
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|15661667|gb|BI699038.1|BI699038
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|4395716|gb|AI494713.1|AI494713
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|4395716|gb|AI494713.1|AI494713
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6665876|gb|AW277326.1|AW277326
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6665876|gb|AW277326.1|AW277326
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7042340|gb|AW472234.1|AW472234
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7042340|gb|AW472234.1|AW472234
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7145680|gb|AW507602.1|AW507602
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7145680|gb|AW507602.1|AW507602
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7145680|gb|AW507602.1|AW507602
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|7145680|gb|AW507602.1|AW507602
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13312671|gb|BG406322.1|BG406322
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13312671|gb|BG406322.1|BG406322
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|26048143|gb|CA784719.1|CA784719
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|26048143|gb|CA784719.1|CA784719
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|151401262|gb|EV271076.1|EV271076
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|151401262|gb|EV271076.1|EV271076
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|8403758|gb|BE059325.1|BE059325
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|8403758|gb|BE059325.1|BE059325
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6200792|gb|AW152892.1|AW152892
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6200792|gb|AW152892.1|AW152892
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6200792|gb|AW152892.1|AW152892
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|6200792|gb|AW152892.1|AW152892
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13252073|gb|BG362976.1|BG362976
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13252073|gb|BG362976.1|BG362976
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13252073|gb|BG362976.1|BG362976
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|13252073|gb|BG362976.1|BG362976
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|15000825|gb|BI321639.1|BI321639
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-
EST: gi|15000825|gb|BI321639.1|BI321639
EST:     AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGAT                         G
genomic: AATTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAAATGATTAAAGATgtaagttttt ... aatgcaggag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG
      agtaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
-ctatgag
- - - - - - -aaaaata
- - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - ggaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg