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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtattatgtgatttctgcatttatttacttgtttataagcttgcaattgatagtatatcaaatttattgttcagGAAACTTTGATGTGATAAATGAGCCAAACAATATAAGTGATTATTCAAGGAAGACTGTATGCTTCCTTATGTTTGTAGATGAACAAACAGAAAAATATCT

Basic information

species Glycine max
transcript GLYMA07G31680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058368|gb|AI736844.1|AI736844
EST:     TTTTGAAATGGAGCAGTGTGATGGAGTGGTTGTTGCATCAGCCATATTTG                         GAAACTTTGATGTGATAAATGAGCCAAACAATATAAGTGATTATTCAAGGA
genomic: TTTTGAAATGGAGCAGTGTGATGGAGTGGTTGTTGCATCAGCCATATTTGgtctgtatta ... tattgttcagGAAACTTTGATGTGATAAATGAGCCAAACAATATAAGTGATTATTCAAGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttacttgtttataagcttgcaattgatagtatatcaaatttattgttcagGAAACTTTGATGTGATAAATGAGCCAAACAATATAAGTGATTATTCAAGGAAGACTGTATGCTTCCTTATGTTTGTAGATGAACAAACAGAAAAATATCT
                         aattgat  putative branch site (score: 4)
                         aattgatagtatatca  TA-rich tract