1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...catcattttcttgagcaatcctcatggcatgattatgaaatatgcacgtcgatgcattgttatgtaaattacataatttgagcttaacccatgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAG
species | Glycine max |
transcript | GLYMA07G29630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGG GACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATEST: gi|16348300|gb|BI973895.1|BI973895
genomic: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGGgtatggctgg ... atgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGAT
EST: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGG GACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATEST: gi|192294866|gb|FG987555.1|FG987555
genomic: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGGgtatggctgg ... atgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGAT
EST: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGG GACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGAT
genomic: GGAAAGCTGGGCAGCCAATCTCTTCTGTATTCCCACATTTGAGCACTCGGgtatggctgg ... atgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGAT
acgtcgatgcattgttatgtaaattacataatttgagcttaacccatgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAG
gcttaac putative branch site (score: 3)
attgttatgtaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcattttcttgagcaatcctcatggcatgattatgaaatatgcacgtcgatgcattgttatgtaaattacataatttgagcttaacccatgtttgcagGACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - -cctcatg
- - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - gatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg