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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgattttcttcttccaggtagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAATATTGTGGTTTACGTTGTTCAG

Basic information

species Glycine max
transcript GLYMA07G28990.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G28990.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 3'ss of exon 4
gcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgattttcttcttccaggtagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAATATTGTGGTTTACGTTGTTCAG
                                                         |   | |  |    || | | ||    |||   |||     ||  |||  ||      | |    |   ||  ||||||||||||||||| |||||||| ||||  ||||||||||  || ||||||   || || |||||  |||||
--------------------------------------------------------gtaaaccttgattctgtatatattttcaatttagtttttcctgc--attgttgttgatatttactctatcttggcagGCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400364|gb|BM177146.1|BM177146
EST:     TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAG                         GCACGTGCTGTATCAACTGATGGGCTGAAACCAAGGTTCTATACTATTAAT
genomic: TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGgcaagtttga ... gctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAAT
EST: gi|19936698|gb|BQ080978.1|BQ080978
EST:     TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAG                         GCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAAT
genomic: TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGgcaagtttga ... gctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAAT
EST: gi|209712879|gb|BW679156.1|BW679156
EST:     TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAG                         GCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAAT
genomic: TTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGgcaagtttga ... gctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgattggttttgatgggctgattactgcctcggtgttaaatgctttttcagGCACGTGCTGTATCAACTGATGGGCTGAAACCAAGTTTCTATACTATTAATATTGTGGTTTACGTTGTTCAG
                                            tgctttttc  CT-rich tract
                                     tgttaaat  TA-rich tract