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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttattcaggttacagattctctgaaaatatttaccattttagattgcatgttacttctgtttacaattattctgatatgatgctatgatgtcagaactgcttcaagttatacaaatcatgtatagcttatggctgatcttgtttagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA

Basic information

species Glycine max
transcript GLYMA07G17680.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 3'ss of exon 4
gtaagttttattcaggttacagattctctgaaaatatttaccattttagattgcatgttacttctgtttacaattattctgatatgatgctatgatgtcagaactgcttcaagttatacaaatcatgtatagcttatggctgatcttgtttagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA
                                      |    |  |||     |    |  || ||| |    |  | | |     | ||||||  | |   ||   || |  ||  ||||      ||   | ||  |  ||             ||| || || || |||||||| || |||||||||||||| || ||||||||||| ||||
-------------------------------------ctgggctcctaggaaaaa----aaatccgttgatggctggtttaa----gtcctatgaaattacggctttatccacata-gcaaactg---attcttcataaccaatgg-----------cagTTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAA

upper sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g04920.1 (Oryza sativa), 3'ss of exon 5
gtaagttttattcaggttacagattctctgaaaatatttaccattttagattgcatgttacttctgtttacaattattctgatatgatgctatgatgtcagaactgcttcaagttatacaaatcatgtatagcttatg-gctgatcttgtttagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA
                                                             |||    || ||   || |     |  || ||  ||  || | |   | || |  |   |   ||  ||      ||  || || || ||    || ||| ||||||||||||||||| ||||||||||| ||  | || ||||||    ||||||
-------------------------------------------------------------ttcccagtaaaagccttttagcgggtggcaatactggaagtattatatgaactattttgagctattcatcatagctgtactaatgtttttccccctgcagATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAA

upper sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 5
gtaagttttattcaggttacagattctctgaaaatatttaccattttagattgcatgttacttctgtttacaattattctgatatgatgctatgatgtcagaactgcttcaagttatacaaatcatgtatagcttatggctgatcttgtttagt-ctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA
                                                   | ||  ||     ||||||| ||| ||   || ||||||||  ||  || |  |    ||| |  | |   |     | |   |     |  ||||| || || || ||| || || |||||||| |||||||| ||| |||||||||||||||||||||||||||
---------------------------------------------------ttcaacttgtaaatgtttaccatt-tttcaatttgatgctagaattaca-aggtataccaactagtgc---ttgaacagaatct-----tattcttgctttgttctgcagATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590070|gb|AW705831.1|AW705831
EST:     AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCTGT                         GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGAT
genomic: AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCTGTgtaagtttta ... tagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcaagttatacaaatcatgtatagcttatggctgatcttgtttagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA
                                ggctgat  putative branch site (score: 4)
                                      tcttgttt  CT-rich tract
        ttatacaaat  TA-rich tract