1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcattactttcatattcgctttctctctccctcctctccctctctgtcatttgtgcatacattgcatggaatttgatcttacagatgatttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATTCAATCCAATTCTTGGTGAGACTTATGAAATGGTTAACCATGGTGGCAT
species | Glycine max |
transcript | GLYMA07G15930.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT CATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATEST: gi|254332080|gb|GR846283.1|GR846283
genomic: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTTgtaagcatta ... atttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCAT
EST: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT CATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATEST: gi|19053342|gb|BM732009.1|BM732009
genomic: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTTgtaagcatta ... atttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCAT
EST: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT CATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCAT
genomic: AGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTTgtaagcatta ... atttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCAT
tctgtcatttgtgcatacattgcatggaatttgatcttacagatgatttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATTCAATCCAATTCTTGGTGAGACTTATGAAATGGTTAACCATGGTGGCAT
atcttac putative branch site (score: 3)
tttttgc putative PPT
atgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattactttcatattcgctttctctctccctcctctccctctctgtcatttgtgcatacattgcatggaatttgatcttacagatgatttttgcagCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATTCAATCCAATTCTTGGTGAGACTTATGAAATGGTTAACCATGGTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG