Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagacatagataactttggtattttgggtctgttaattcttctcttgtttttgtgtgttttggatataatatgatcatttctttcatgtttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG

Basic information

species Glycine max
transcript GLYMA07G12980.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457646|gb|CD399674.1|CD399674
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31462596|gb|CD404624.1|CD404624
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31306116|gb|CD391319.1|CD391319
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|298171825|gb|HO021417.1|HO021417
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31457042|gb|CD399070.1|CD399070
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31457464|gb|CD399492.1|CD399492
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGG-AACAAAG
EST: gi|7796078|gb|AW781475.1|AW781475
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|208087792|gb|GD888596.1|GD888596
EST:     GATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: GATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192331548|gb|FK023424.1|FK023424
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTCGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|22927863|gb|BU545002.1|BU545002
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7686605|gb|AW757253.1|AW757253
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31467620|gb|CD409648.1|CD409648
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|15662434|gb|BI699805.1|BI699805
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31474830|gb|CD416858.1|CD416858
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|208280548|gb|GE080928.1|GE080928
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|57575286|gb|CX548261.1|CX548261
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31465644|gb|CD407672.1|CD407672
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|298183238|gb|HO028223.1|HO028223
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGCGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|12691356|gb|BG157692.1|BG157692
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|151401940|gb|EV271753.1|EV271753
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31463797|gb|CD405825.1|CD405825
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATTTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAATCTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAA-CTAAAGGCTGGAACAAAG
EST: gi|192331547|gb|FK023423.1|FK023423
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTCGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31469331|gb|CD411359.1|CD411359
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|20448813|gb|BQ252937.1|BQ252937
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|26059701|gb|CA802615.1|CA802615
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|20811574|gb|BQ296052.1|BQ296052
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192321257|gb|FK014347.1|FK014347
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|10848296|gb|BF070817.1|BF070817
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|13788822|gb|BG651413.1|BG651413
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|27445924|gb|CA953047.1|CA953047
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192314355|gb|FK008381.1|FK008381
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7692141|gb|AW760255.1|AW760255
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31471469|gb|CD413497.1|CD413497
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31460814|gb|CD402842.1|CD402842
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192298638|gb|FG990949.1|FG990949
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|209700427|gb|BW664427.1|BW664427
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31469168|gb|CD411196.1|CD411196
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|10844859|gb|BF068055.1|BF068055
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|13789520|gb|BG652111.1|BG652111
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAAAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7639234|gb|AW733561.1|AW733561
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31475239|gb|CD417267.1|CD417267
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACCAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31456084|gb|CD398112.1|CD398112
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31467937|gb|CD409965.1|CD409965
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|8827741|gb|BE211471.1|BE211471
EST:     TTTGCTGCCCAAGTCAGNCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTGCTGCCCAAGTCAG-CTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|19271181|gb|BM887437.1|BM887437
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|12690107|gb|BG156443.1|BG156443
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7284797|gb|AW597222.1|AW597222
EST:     TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttttgtgtgttttggatataatatgatcatttctttcatgtttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
                                  tttctttcatgttt  CT-rich tract
                    atataatatgatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtagacatagataactttggtattttgggtctgttaattcttctcttgtttttgtgtgttttggatataatatgatcatttctttcatgtttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA