1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtgatatttcaaggacaaaaaaatttataaacttaagtttttaaaaaatgtgtttaaataattgcatatcatgttaatttgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGCC
species | Glycine max |
transcript | GLYMA07G10930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|298171695|gb|HO021287.1|HO021287
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGACGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|9986003|gb|BE660009.1|BE660009
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|298192133|gb|HO036215.1|HO036215
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGCGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|298173103|gb|HO020087.1|HO020087
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
aaaatgtgtttaaataattgcatatcatgttaatttgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGCC
tgttaat putative branch site (score: 3)
tttaaataattgcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgatatttcaaggacaaaaaaatttataaacttaagtttttaaaaaatgtgtttaaataattgcatatcatgttaatttgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGCC
- - - - - - - - -aaaaaaa
- - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtta