1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcatgcgaataattgaagttttcacaattgtattcttcgtacatactctttaattattgaagttcctaaataccatctttttttccgtcgttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAACATTCT
species | Glycine max |
transcript | GLYMA07G09180.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|19348059|gb|BM892591.1|BM892591
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|192312979|gb|FK004625.1|FK004625
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|208239088|gb|GE037166.1|GE037166
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|23053843|gb|BU577597.1|BU577597
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|192312980|gb|FK004626.1|FK004626
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|21677113|gb|BQ629464.1|BQ629464
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAAEST: gi|19348345|gb|BM892877.1|BM892877
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
EST: TCTTGTTAGAAGCTACTGGGTATATCAGATTCCTTCAGAGTCAAATTGAG GCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
genomic: TCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttc ... ttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAA
ctctttaattattgaagttcctaaataccatctttttttccgtcgttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAACATTCT
tcctaaa putative branch site (score: 2)
tctttttttccgtcgt putative PPT
taattattgaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgcgaataattgaagttttcacaattgtattcttcgtacatactctttaattattgaagttcctaaataccatctttttttccgtcgttggatgcagGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGGAACACGAGGCAGCAACATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA