1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaccttttacgttaaatttccttgcaaacatagaggtgttttcctgttttgcttaaatagatgatgtgatttgatattgattgattttgttttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAA
species | Glycine max |
transcript | GLYMA07G09070.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAA GCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACEST: gi|213611862|gb|DB958900.1|DB958900
genomic: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAAgtgagtatgc ... tttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTAC
EST: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAA GCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACEST: gi|193723979|gb|FK658779.1|FK658779
genomic: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAAgtgagtatgc ... tttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTAC
EST: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGCAGCAGAA GCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTAC
genomic: TGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAAgtgagtatgc ... tttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTAC
gttttgcttaaatagatgatgtgatttgatattgattgattttgttttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAA
ttttgttttctttt CT-rich tract
attttgttttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccttttacgttaaatttccttgcaaacatagaggtgttttcctgttttgcttaaatagatgatgtgatttgatattgattgattttgttttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg