1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttatattgttttttgcagtatttttataaatgtagttgttctttgctttactgttttcaggcttgttgattacttgtttgcttattgcaatattctttattcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAAGACAGGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACC
species | Glycine max |
transcript | GLYMA07G08320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTEST: gi|193726623|gb|FK658591.1|FK658591
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTT
EST: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAAEST: gi|208124691|gb|GD925145.1|GD925145
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
EST: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAAEST: gi|193602745|gb|FK560226.1|FK560226
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
EST: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG GCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
genomic: ACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGgtatttatat ... ttcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAA
tttcaggcttgttgattacttgtttgcttattgcaatattctttattcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAAGACAGGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACC
tgttgat putative branch site (score: 4)
ttctttattcattcc putative PPT
aatattctttattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatattgttttttgcagtatttttataaatgtagttgttctttgctttactgttttcaggcttgttgattacttgtttgcttattgcaatattctttattcattccagGCTAAGTGCCTTGAAACTGGTGAATCTGTTGCCATAAAGAAGGTGTTGCAAGACAGGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT