1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtaaacttcattcttatttctcaaattgcgcttttgttttaagtgttttcctttcatgccgtaggctacatacttgtctggtagtttatgtcatcatgagttattttctgttatcggagacatgagaatggtgtgaacttgcaaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
species | Glycine max |
transcript | GLYMA07G07770.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATG GTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAGEST: gi|7684702|gb|AW755350.1|AW755350
genomic: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATGgtagtaaact ... caaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
EST: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATG GTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAGEST: gi|298175909|gb|HO015314.1|HO015314
genomic: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATGgtagtaaact ... caaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
EST: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGATTACTTTGGTTATG GTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
genomic: TGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATGgtagtaaact ... caaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
tgagttattttctgttatcggagacatgagaatggtgtgaacttgcaaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
tattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaaacttcattcttatttctcaaattgcgcttttgttttaagtgttttcctttcatgccgtaggctacatacttgtctggtagtttatgtcatcatgagttattttctgttatcggagacatgagaatggtgtgaacttgcaaattgcagGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG