1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgttctttctttaaacctaatgagaaaatatttggttttctatttaagttttccatttagaaattttttggttcattttcacatgtctaaatatatgcattgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGA
species | Glycine max |
transcript | GLYMA07G07540.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|58023135|gb|CX709876.1|CX709876
genomic: GTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|31464781|gb|CD406794.1|CD406794
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|10252837|gb|BE820603.1|BE820603
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|14011775|gb|BG726697.1|BG726697
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|15812810|gb|BI785085.1|BI785085
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|151400703|gb|EV270517.1|EV270517
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG AACTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAEST: gi|23730924|gb|BU763571.1|BU763571
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
EST: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG ATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
genomic: AGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGgtaatgttct ... attgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCA
catttagaaattttttggttcattttcacatgtctaaatatatgcattgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGA
gtctaaa putative branch site (score: 3)
ttgtttc putative PPT
atgtctaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttctttctttaaacctaatgagaaaatatttggttttctatttaagttttccatttagaaattttttggttcattttcacatgtctaaatatatgcattgtttcagATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT