1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcctggtagaatgcaaattcccattctccgatccttttcagatctctttctgatttaaaatgaactctagcatgacaattttcttttctttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCCCAATATCCAAAGCAAAACTTTT
species | Glycine max |
transcript | GLYMA07G07270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAG CTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAATEST: gi|13480224|gb|BG509567.1|BG509567
genomic: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattattag ... tttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAAT
EST: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAG CTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAATEST: gi|254315199|gb|GR830192.1|GR830192
genomic: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattattag ... tttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAAT
EST: CAAAGATTATGTTCATCAGCTGAGACTTATCCACAGAG CTGATAGGTTCCCCCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAEST: gi|16996008|gb|BM085380.1|BM085380
genomic: CAAAGATTATGTTCATCAGCTGAGACTTAT-CACAGAGgtattattag ... tttcaaaaagCTGATAGGTT-CACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATA
EST: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAG CTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATEST: gi|120530146|gb|EH258280.1|EH258280
genomic: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattattag ... tttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGAT
EST: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAG CTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAAT
genomic: CACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTTATCACAGAGgtattattag ... tttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAAT
ctctttctgatttaaaatgaactctagcatgacaattttcttttctttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCCCAATATCCAAAGCAAAACTTTT
ttctgat putative branch site (score: 3)
caattttcttttcttt putative PPT
aattttcttttctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctggtagaatgcaaattcccattctccgatccttttcagatctctttctgatttaaaatgaactctagcatgacaattttcttttctttcaaaaagCTGATAGGTTCACCCAATGATGCCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCCCAATATCCAAAGCAAAACTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
tttcctg
- - - - - gaatgca
- - - - - - - - - - - -cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac