1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactatattcatgatctagcatgcatacactggtatacatgtcaatgcttgaattgttttgatcacagtggtttttgtgtatcttttcagATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAGTGGAACCCAAAGGTTTCT
species | Glycine max |
transcript | GLYMA07G07250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGG ATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTEST: gi|11413988|gb|BF426063.1|BF426063
genomic: CCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGGgtactatatt ... atcttttcagATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGT
EST: CCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGG ATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGT
genomic: CCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGGgtactatatt ... atcttttcagATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGT
tacatgtcaatgcttgaattgttttgatcacagtggtttttgtgtatcttttcagATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAGTGGAACCCAAAGGTTTCT
ttttgat putative branch site (score: 4)
tatcttttc putative PPT
aattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatattcatgatctagcatgcatacactggtatacatgtcaatgcttgaattgttttgatcacagtggtttttgtgtatcttttcagATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAGTGGAACCCAAAGGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA