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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgccttcatgtgtctatttggattttgaattattgtattgttgtcctgaaactgaaatgaacgagtttgtgtagGTTGTAGAGACAGCGTTGGCTTTACAAGAAGCAGGGTGCTTTTCCGTTGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTC

Basic information

species Glycine max
transcript GLYMA07G06950.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06950.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 3'ss of exon 2
--------------gtctgccttcatgtgtctatttggattttgaattattgtattgttg------------------tcctgaaac------tgaaatgaacgagtttgtgtagGTTGTAGAGACAGCGTTGGCTTTACAAGAAGCAGGGTGCTTTTCCGTTGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTC
| || ||| || | || ||||| || | | ||| ||| || ||| |||| || |||| | ||||||| ||||| || |||||||||| ||||| ||||| ||| | |||||||| || |||||||||||||| || || |||||||| || || ||||||
gtccttctctttccatttgtattcttgggggatttaggattcaaaaaaaatatatcgttaggtgctgtcaagatctctctctaaaatccatgttgaattggtttgatttgagcagGTTGTGGAGACTGCAATGGCTTTACAGGAAGCTGGGTGTTTTGCTGTTGTTCTTGAATGTGTGCCTGCACCTGTGGCTGCTGCAACAACATCAGCCCTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattttgaattattgtattgttgtcctgaaactgaaatgaacgagtttgtgtagGTTGTAGAGACAGCGTTGGCTTTACAAGAAGCAGGGTGCTTTTCCGTTGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTC
     ttgaattattgtatt  TA-rich tract