1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagaacaatctattccgtttcatatataatgttttcaaagttatgaatatgaactatgaagttttacttatttcttcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAAGATAGACCCTCTAGCAGAGAAGGCACTCGTTGAGTTCAAGAAGCAGTA
species | Glycine max |
transcript | GLYMA07G06830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAEST: gi|16346040|gb|BI971635.1|BI971635
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAEST: gi|13790242|gb|BG652833.1|BG652833
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAEST: gi|151403313|gb|EV273123.1|EV273123
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAEST: gi|192320226|gb|FK014240.1|FK014240
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTTTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACTAGTATGAGGATAEST: gi|192325037|gb|FK016163.1|FK016163
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAEST: gi|192320241|gb|FK014241.1|FK014241
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACTAGTATGAGGATAEST: gi|26057729|gb|CA800643.1|CA800643
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG CTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATA
gttttcaaagttatgaatatgaactatgaagttttacttatttcttcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAAGATAGACCCTCTAGCAGAGAAGGCACTCGTTGAGTTCAAGAAGCAGTA
ttttacttatttcttc CT-rich tract
aagttttacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacaatctattccgtttcatatataatgttttcaaagttatgaatatgaactatgaagttttacttatttcttcatttgcagCTTTTGTTTTGTTGCATACGGTTCCTGTCTTGTATGACAAGTATGAGGATAAGATAGACCCTCTAGCAGAGAAGGCACTCGTTGAGTTCAAGAAGCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC