1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcatattttcagtcctgtttaaagagataattttttgtatttttttttcttcttttatcttggcttgctattttagcgtatatttacttattctttctatcctctctgctgtataatatttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCTGTGGCTT
species | Glycine max |
transcript | GLYMA07G05530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCAEST: gi|193384245|gb|FK349299.1|FK349299
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCA
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAA-CTTAAAACTEST: gi|208323744|gb|GE122315.1|GE122315
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACT
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAGGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTCTTCACCGAAAAAEST: gi|213595702|gb|DB962474.1|DB962474
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAA
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGEST: gi|208332607|gb|GE130272.1|GE130272
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCG
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCEST: gi|209726010|gb|BW654795.1|BW654795
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACC
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTEST: gi|193371412|gb|FK336925.1|FK336925
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACT
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAAATACAACCTTTTCAEST: gi|208269240|gb|GE070248.1|GE070248
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAA-TACAACCTTTTCA
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAA-CTTAAAEST: gi|208167545|gb|GD965169.1|GD965169
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAA
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTEST: gi|18734852|gb|BM528422.1|BM528422
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACT
EST: GCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTEST: gi|208187444|gb|GD985474.1|GD985474
genomic: GCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACT
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACEST: gi|207818832|gb|GD790303.1|GD790303
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCAC
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCACCGEST: gi|193418967|gb|FK382253.1|FK382253
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCG
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTEST: gi|193341542|gb|FK306754.1|FK306754
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTT
EST: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCT ATTAGCACTCCTACTCAAAATACAACCTTTTCA
genomic: GGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcata ... atttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCA
ttagcgtatatttacttattctttctatcctctctgctgtataatatttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCTGTGGCTT
tttattc CT-rich tract
tatatttacttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcatattttcagtcctgtttaaagagataattttttgtatttttttttcttcttttatcttggcttgctattttagcgtatatttacttattctttctatcctctctgctgtataatatttattcagATTAGCACTCCTACTCAAAATACAACCTTTTCACCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCTGTGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA