Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatagtgtgtttatcatttctacttgaagatcttctctttttcttcctttctaaacattggtgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG

Basic information

species Glycine max
transcript GLYMA07G05410.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05410.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G175265_T01 (Zea mays), 3'ss of exon 3
gtgatagtgtgtttatcatttctacttgaagatcttctctttttcttcctttctaaacattggtgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG--------------------------------------
                                                                      || || ||  |  | | |  | |    |||    |  |    ||||| |   |||    ||  | |      ||    |  | ||  |||||||    | ||  | ||||||| | || |||||||| |||||||| ||||| |||||||| ||||||||||| || |||                                      
---------------------------------------------------------------------gttttaata--agcttgcttgtaaccactgaggattattcatgtggatttagttttccaattgatac------tgattgcaatttttttgtttcatcaat-ctccatagAGCATGTTGGGACAAAGACGGCCGTGCAGATCAGAAGTCACGCTCAAAAGTTCTTCACCAAGGTTCTTTCTCTATCTGATTGGCTAGTGCTCTTGTTTGG

upper sequence: GLYMA07G05410.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G014902_T01 (Zea mays), 3'ss of exon 7
gtgatagtgtgtttatcatttctacttgaagatcttctctttttcttcctttctaaacattggtgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatg-gcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG
                                                                            |    |||   |   ||  |  | ||||||| ||  | ||| |   ||  | | || |   ||  ||| |     ||  |   | |||     ||||  | ||||||| | || |||||||| |||||||| ||||| |||||||| ||||||||||| || |||
----------------------------------------------------------------------------tcatcaatctgtaaccac-tgaggtttattcatg--tcgatttagtttgctttatactgattgcactttgttttgtttgtttggcttctgagttgctccatagAGCATGTTGGGACAAAGACAGCCGTGCAGATCAGAAGTCACGCTCAAAAGTTCTTCACTAAG

upper sequence: GLYMA07G05410.3 (Glycine max), 3'ss of exon 4
lower sequence: AT1G01060.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgatagtgtgtttatcatttctacttgaagatcttctctttttcttcctttctaaacattgg--tgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG
                                                   || |||  ||    | | |   | ||||   || |     || | |||| || |    ||| || |   ||||||| |||    |  || |   |   || |||||    ||||| ||    ||| |||| ||||| || ||||||||||| || || ||||| ||||| |||||||||||||| ||||||
--------------------------------------------------gtcgaaagtttatcttttgaatgtttagtttgaact---ctttgagattttatattcctttgtttaggagtgtctttatctcctcttgattgggagattcc-ttcttttcttttcatttt--gtgtgcagAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCACAAAAGTTCTTCACAAAG

upper sequence: GLYMA07G05410.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0048g02410.t01 (Vitis vinifera), 3'ss of exon 2
gtgatagtgtgtttatcatttctacttgaagatcttctctttttcttcctttctaaacattggtgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG
                                                                  | |  |   | | || |||||   |  | ||| | |||| |||  |   |  ||    | | ||  |||| |            | ||| || |||   |  || ||| |||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||
------------------------------------------------------------------atctattatgaataacatggaatgttgtcttttaattatacttagtcttacttggagatctgttccttcctt------------tcctttgtttttatttggtggtgtgcagAACATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCACAAAAATTCTTTTCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193527554|gb|FK484302.1|FK484302
EST:     GTTTCTTGAAGCTTTGAAACTACACGGGCGAGCATGGCAGCGCATAGAAG                         AGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGT
genomic: GTTTCTTGAAGCTTTGAAACTACACGGGCGAGCATGGCAGCGCATAGAAGgtgatagtgt ... tgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacagAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAG
                                    tttcacttct  CT-rich tract
     tttatt  TA-rich tract