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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctatatcttttattacttttttcttgatttttgttctgatattataattcattaatttctaacattcatgtttctttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCT

Basic information

species Glycine max
transcript GLYMA07G05230.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407175|gb|FK371066.1|FK371066
EST:     AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA
genomic: AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA
EST: gi|213590529|gb|DB973302.1|DB973302
EST:     AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA
genomic: AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA
EST: gi|5606215|gb|AI900313.1|AI900313
EST:     AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT                         AAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA
genomic: AACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTTgtatgtttct ... ttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctgatattataattcattaatttctaacattcatgtttctttggatgcagAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCT
                          ttctaac  putative branch site (score: 1)
 tgtttcttt  putative PPT
 atattataattcatta  TA-rich tract