1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcttgtcttatgctatgtgaaatgccatgattttcccccccttttgaagttgccatgttgcacctaatataccattaccttctgctttgatgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG
species | Glycine max |
transcript | GLYMA07G05220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGEST: gi|298168532|gb|HO009462.1|HO009462
genomic: TGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
EST: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGEST: gi|192302201|gb|FG997281.1|FG997281
genomic: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
EST: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGEST: gi|193512879|gb|FK468649.1|FK468649
genomic: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
EST: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGEST: gi|16346898|gb|BI972493.1|BI972493
genomic: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
EST: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGEST: gi|209711453|gb|BW665205.1|BW665205
genomic: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
EST: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAG TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
genomic: CAAATTCTGAAGATGCCAAGTATGTTATCAATGTGAAGCAGATTGCAAAGgtgcctatat ... atgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGG
tgaagttgccatgttgcacctaatataccattaccttctgctttgatgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG
taatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgtcttatgctatgtgaaatgccatgattttcccccccttttgaagttgccatgttgcacctaatataccattaccttctgctttgatgatggcagTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA