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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgaaatgatgcagagaatatgtgcttcctttgcagtgttaattttttaggtttgactcttagttttcatgttttgttgaataaaagtttctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGTACCTCCCTCTGGAATTGATACTGTCCAACCATCTGGCTGGGATTAAAC

Basic information

species Glycine max
transcript GLYMA07G04890.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208042449|gb|GD839139.1|GD839139
EST:     GGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207680064|gb|GD663678.1|GD663678
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|209709186|gb|BW657155.1|BW657155
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|58024454|gb|CX711195.1|CX711195
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|254348667|gb|GR852346.1|GR852346
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193588414|gb|FK544093.1|FK544093
EST:     TCCAGCAGTATCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGG-AAGCTGTTCC
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCC
EST: gi|254333513|gb|GR848431.1|GR848431
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193716511|gb|FK652529.1|FK652529
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|31307688|gb|CD392891.1|CD392891
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193324159|gb|FK288351.1|FK288351
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGG-AAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|151403869|gb|EV273679.1|EV273679
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207703719|gb|GD686591.1|GD686591
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|209713306|gb|BW684393.1|BW684393
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|192314595|gb|FK008131.1|FK008131
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193530778|gb|FK484975.1|FK484975
EST:     GGGGGGCGACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|19935381|gb|BQ080411.1|BQ080411
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193321399|gb|FK286543.1|FK286543
EST:     TCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATT-GGGGGAAGCTGTTCCACCACCACGACAAATCCCTG
genomic: TCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208257276|gb|GE050923.1|GE050923
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193471392|gb|FK438509.1|FK438509
EST:     CTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: CTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|209699419|gb|BW664139.1|BW664139
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207844541|gb|GD816588.1|GD816588
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208222128|gb|GE020398.1|GE020398
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207785304|gb|GD759055.1|GD759055
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGG-CACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAG
EST: gi|193449377|gb|FK416412.1|FK416412
EST:     GGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|19935382|gb|BQ080412.1|BQ080412
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193325989|gb|FK292262.1|FK292262
EST:     CACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: CACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|17023070|gb|BM094104.1|BM094104
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207695804|gb|GD677649.1|GD677649
EST:     GGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193462130|gb|FK425957.1|FK425957
EST:     GGGGGGCGACCTGCAGAAGCACCTGCCG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: GGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|209708217|gb|BW678587.1|BW678587
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|209702183|gb|BW664625.1|BW664625
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|58019522|gb|CX706264.1|CX706264
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGTGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|193475920|gb|FK441231.1|FK441231
EST:     CCTGGTGTCAACTGGGGGGCGACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: CCTGGTGTCAACTGGGGGGC-ACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|254336100|gb|GR841425.1|GR841425
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|192314596|gb|FK008132.1|FK008132
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|207752928|gb|GD725494.1|GD725494
EST:     CACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: CACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|58016477|gb|CX703219.1|CX703219
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGTGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208339666|gb|GE139302.1|GE139302
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|208123422|gb|GD921384.1|GD921384
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGG-AAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|120529117|gb|EH257251.1|EH257251
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
EST: gi|24136637|gb|BU927147.1|BU927147
EST:     TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTG                         CTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG
genomic: TCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGgtatgtgatt ... tctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaggtttgactcttagttttcatgttttgttgaataaaagtttctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGTACCTCCCTCTGGAATTGATACTGTCCAACCATCTGGCTGGGATTAAAC
      gtttgac  putative branch site (score: 4)
                                           tttctcttgc  putative PPT
                           ttttgttgaataaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtgaaatgatgcagagaatatgtgcttcctttgcagtgttaattttttaggtttgactcttagttttcatgttttgttgaataaaagtttctcttgcagCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGTACCTCCCTCTGGAATTGATACTGTCCAACCATCTGGCTGGGATTAAAC

- - - -tgatgca
- - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - cctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa