1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttcccaaggtgatgaaaaaagctagaattctggttatggtgtttatgagggggtgaacaacttgttttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT
species | Glycine max |
transcript | GLYMA07G03680.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|192330937|gb|FK023110.1|FK023110
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCCGGAGGTGAAGGTGEST: gi|37997246|gb|CF808835.1|CF808835
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|193557652|gb|FK511965.1|FK511965
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: GGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|31476276|gb|CD418304.1|CD418304
genomic: GGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|58024911|gb|CX711652.1|CX711652
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|120496663|gb|EH224830.1|EH224830
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TTACTATGATAAAAGGATAGTCGGATGCCCATGAGGTGAAGGTG AGGATGAGCATGATGTTGTCTGATATTGGCTGGAGAAAGACAAGCCCCATEST: gi|14126582|gb|BG791020.1|BG791020
genomic: TTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCAT
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG GEST: gi|14126582|gb|BG791020.1|BG791020
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGgtggtgagta ... ttgattacag-
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG GEST: gi|14126582|gb|BG791020.1|BG791020
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGgtggtgagta ... ttgattacag-
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG GEST: gi|14126582|gb|BG791020.1|BG791020
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGgtggtgagta ... ttgattacag-
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG GEST: gi|31306843|gb|CD392046.1|CD392046
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGgtggtgagta ... ttgattacag-
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|120496630|gb|EH224797.1|EH224797
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGEST: gi|15812956|gb|BI785231.1|BI785231
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
EST: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG
genomic: TGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAA---Ggtggtgagta ... ttgattac
ctagaattctggttatggtgtttatgagggggtgaacaacttgttttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT
ttttgat putative branch site (score: 4)
cttgtttt CT-rich tract
ttttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttcccaaggtgatgaaaaaagctagaattctggttatggtgtttatgagggggtgaacaacttgttttgattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA