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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcactttttcaagtgattactataacttgtatgccatagcagctgatggcaatcgattaaaatgtgtgatgaatcattgttattcttattttcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTT

Basic information

species Glycine max
transcript GLYMA07G03210.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 6
gtatttgcacttt--ttcaagtgattactataacttgtatgccatagcagctgatggcaatcgattaaaatgtgtgatgaatcattgttattcttattttcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTT
 || || |  ||   ||||  |||| | | | | || | |      |       | ||  |   ||  | | ||  |      | |   ||   |  |    | | ||||||| | |||| |||||| || |||||||||||||| || || ||||| |  |||||||||||||| || ||
ctaatttcctttaggttcatctgatcaatgtcagttattttttgatgtg-----ttgctcttatttttattctgctagtttcaactaacatcaatggt----taaccagGGTACTAAAACGGGGAGGAAGATTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193727049|gb|FK659829.1|FK659829
EST:     GGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
genomic: GGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
EST: gi|7028434|gb|AW458217.1|AW458217
EST:     GGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCGAGAGGCATGTTCCTTTGCCTTGATCTGAGTCATGTTGG
genomic: GGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
EST: gi|193439683|gb|FK405886.1|FK405886
EST:     TGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAG                         GGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG
genomic: TGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGgtatttgcac ... tcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcaatcgattaaaatgtgtgatgaatcattgttattcttattttcttgaacagGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTT
                                 ttattcttattttctt  CT-rich tract
                         aatcattgttattctt  TA-rich tract