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gtaagaaaatcagtttcagtttttataaacagagtgggttgaattttttgctagcaatttgttgacagttagttctttgtttttcatatccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG
species | Glycine max |
transcript | GLYMA07G02180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAA GTGAAGATCCAGCACTGATTTTGTACACTAGTGG-ACAACGGGTAAACCTAEST: gi|11687559|gb|BF595235.1|BF595235
genomic: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAAgtaagaaaat ... attcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTA
EST: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAA GTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTAEST: gi|37996226|gb|CF807815.1|CF807815
genomic: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAAgtaagaaaat ... attcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTA
EST: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAA GTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAA-CCTA
genomic: TGGGGGAATTCATACAGATAAAATTTTGTTGGATAAGTTTGGAAGATCAAgtaagaaaat ... attcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTA
tttgctagcaatttgttgacagttagttctttgtttttcatatccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG
tgttgac putative branch site (score: 3)
tccattc putative PPT
tttgtttttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaatcagtttcagtttttataaacagagtgggttgaattttttgctagcaatttgttgacagttagttctttgtttttcatatccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC