1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaggtttctgaaattatttcctcttgttctttgtgtgcttctgtctttacaagttataaatttcttttcttattattttttttttcttttttgtatgatgctgttttagttttaaagctgtgtgatatttgtgtcaacaaatgtgatgttttgatttgggatttctgccaatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAG
species | Glycine max |
transcript | GLYMA07G02170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAG GTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAEST: gi|18039885|gb|BM308179.1|BM308179
genomic: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtttc ... caatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAA
EST: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAG GTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAEST: gi|208079183|gb|GD874923.1|GD874923
genomic: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtttc ... caatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAA
EST: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAG GTAGCTGTTGGGGATGTAATATACAATTAGAGGCAAATAGTGGGGCTGTAAEST: gi|151398565|gb|EV268436.1|EV268436
genomic: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtttc ... caatgtacagGTAGCTGTTGGGGATGTAATATACA-TT-GAGGCAAATAGTGGGGCTGTAA
EST: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAG GTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAA
genomic: AGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtttc ... caatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAA
gatatttgtgtcaacaaatgtgatgttttgatttgggatttctgccaatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAG
ttttgat putative branch site (score: 4)
tttctgcc putative PPT
ttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggtttctgaaattatttcctcttgttctttgtgtgcttctgtctttacaagttataaatttcttttcttattattttttttttcttttttgtatgatgctgttttagttttaaagctgtgtgatatttgtgtcaacaaatgtgatgttttgatttgggatttctgccaatgtacagGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC