1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctttctgcaggtaaatgtgcatgatagttgaaagagagaaaaacacatgaattcatgtactaactttcttaaatattatgaaatctcttaaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG
species | Glycine max |
transcript | GLYMA07G02120.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAG GTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTEST: gi|13312684|gb|BG406335.1|BG406335
genomic: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAGgtgaccactc ... taaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTT
EST: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAG GTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTEST: gi|209722357|gb|BW665843.1|BW665843
genomic: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAGgtgaccactc ... taaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTT
EST: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAG GTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTT
genomic: TTTACAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAGgtgaccactc ... taaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTT
cacatgaattcatgtactaactttcttaaatattatgaaatctcttaaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG
tactaac putative branch site (score: 0)
tctctt putative PPT
taactttcttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttctgcaggtaaatgtgcatgatagttgaaagagagaaaaacacatgaattcatgtactaactttcttaaatattatgaaatctcttaaaaatcagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC